1. Files are transfered from Scanner to Server with Raw Data Storage https://yarra-framework.org/clients/rds/. RAW can be accessed from lobi.nencki.gov.pl/cloud or directly from ./sourcedata/spectro
2. Prepare list.csv https://github.com/nencki-lobi/lobi-mri-scripts/blob/main/spectroscopy/README.md using ls_dat.sh
3. Convert RAW (dat) to nifti using spec2nii (FSL) https://github.com/nencki-lobi/lobi-mri-scripts/blob/main/spectroscopy/MRS2BIDS.md
4. Run dcm2bids (run_dcm2bids.sh) to move the files from ./sourcedata to respective subjects; directories. Do not forget to add new subjects to mjris.csv tail -n 1 mjris.csv | parallel -j 1 --colsep ',' ../lobi-mri-scripts/run_dcm2bids.sh "{1}" {4} {5}